Dear Doug, I'm trying to follow your indication but, please, could you explicate what's meaning "subjet with" and where I should put it?Could you show me the correct command line, please? The wrong command line is mri_label2label --srcsubject fsaverage --srclabel rh.perirhinal.label --trgsubject Con01 --trglabel Con01/label/rh.perirhinal.label --hemi rh --regmethod surface Many thanks,
Stefano
----Messaggio originale---- Da: greve@nmr.mgh.harvard.edu Data: 28-mar-2013 18.32 A: stdp82@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: R: Re: [Freesurfer] perirhinal analysis
If the source subject is subject_prova then you need to spec that subjet 2with --srcsubject (instead of fsaverage) doug
On 03/28/2013 01:11 PM, stdp82@virgilio.it wrote:
Yes, it is located in /Applications/freesurfer/subjects/subject_prova/Con01/label/rh.perirhinal.label.
Stefano
----Messaggio originale---- Da: greve@nmr.mgh.harvard.edu Data: 28-mar-2013 17.46 A: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] perirhinal analysis
It says "no such file or directory" does rh.perifhyinal.label exist?
On 03/28/2013 11:55 AM, stdp82@virgilio.it wrote:
Hi list,
I'm running perirhinal analysis with this error:
mri_label2label --srcsubject fsaverage --srclabel rh.perirhinal.label --trgsubject Con01 --trglabel Con01/label/rh.perirhinal.label --hemi rh --regmethod surface
srclabel = rh.perirhinal.label srcsubject = fsaverage trgsubject = Con01 trglabel = Con01/label/rh.perirhinal.label regmethod = surface
srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0
SUBJECTS_DIR/Applications/freesurfer/subjects/subject_prova FREESURFER_HOME /Applications/freesurfer Loading source label. No such file or directory mri_label2label: could not open label file rh.perirhinal.label No such file or directory ERROR reading rh.perirhinal.label
My $SUBJECTS_DIR=/Applications/freesurfer/subjects/subject_prova and rh.perirhinal.label exist and it is located in /Applications/freesurfer/subjects/subject_prova/Con01/label
Thanks,
Stefano
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