[Freesurfer] control point and aseg edit

miracle ozzoude

14 Sep 2017 14 Sep '17

2:45 p.m.

I used the expert option for control points and manually edited the aseg.presurf.mgz. Which is the proper flag to use in other to incorporate the respective changes?

a) recon-all -autorecon2-cp -autorecon2-noaseg -autorecon3 -expert -parallel -openmp 8 -bigventricles -3T -time

b) recon-all -autorecon2-cp -autorecon3 -expert -parallel -openmp 8 -bigventricles -3T -time

Thanks.

Best, Paul

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