Rosa,
The recon-all.log file indicates that it failed the tailarich_avi step because your system does not have libg2c.dylib. Can you update to a newer version of freesurfer?
You will still have problems getting your hi-res data to be processed by the recon-all stream. I am sorting out those problems now. Basically, any step that involves an atlas or working with 'conformed' volumes (1mm^3, 256^3) needs to be specially handled.
I should point out that little is gained by trying to get surfaces using 0.8mm data versus just letting the stream conform the data and process normally.
Nick
On Wed, 2009-03-25 at 18:57 +0100, Rosa Steimke wrote:
Hi, Im trying to keep images at a resolution of 0.8 mm and used the –cm flag during the convertion. However i got an error message during talairach transformation in autorecon1. The logfile is attached. Do I need to use a flag here, too? I learned form the previous email that I have to also use the –noconform flag during mri-normalization and the –noaseg flag during autorecon2. Are there more things I will need to do? Kind regards. Rosa
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