Re: [Freesurfer] cortical recontruction error

he file is on martinos file drop. thanks claudia

2013/3/25 Bruce Fischl fischl@nmr.mgh.harvard.edu

p.s. the info on both is here:

https://surfer.nmr.mgh.**harvard.edu/fswikihttps://surfer.nmr.mgh.harvard.edu/fswiki

On Mon, 25 Mar 2013, Bruce Fischl wrote:

yes, it will be too big to email. You can either use our ftp site or file

...

drop

cheers Bruce On Mon, 25 Mar 2013, Claudia Dacquino wrote:

I'm sorry, I did mean the moderator of Freesurfer mailing list.

...

2013/3/25 Bruce Fischl fischl@nmr.mgh.harvard.edu you should be able to use our ftp site or file drop. Which administrator do you mean? On Mon, 25 Mar 2013, Claudia Dacquino wrote:

         I was trying, but the administrator did reject that, because
         the file is too big.

         2013/3/25 Claudia Dacquino <claudia.dacquino@gmail.com>
               Hi Bruce,
               I'll try to upload dataset.
               Thanks,
               Claudia

               2013/3/23 Bruce Fischl <fischl@nmr.mgh.harvard.edu>
                     Hi Claudia

                     hmmm, someone else mentioned that mri_cc hangs

for them but we've never seen it. If you upload your dataset I'll see if we can replicate the problem Bruce On Fri, 22 Mar 2013, Claudia Dacquino wrote:

                           Dear Freesurfers,
                           I'm new and I'm starting using Freesurfer.
                           I'm having a problem with one subject,
         during the cortical reconstruction
                           (recon-all) the process stops at this

stage:

                           mri_cc -aseg aseg.auto_noCCseg.mgz -o
         aseg.auto.mgz <subjid>

                           at this point:

                           final transformation (x=128.0, yr=0.978,
         zr=0.153):
                            1.000  -0.003   0.017  -1.456;
                            0.003   1.000   0.000   8.654;
                           -0.017   0.000   1.000   25.201;
                            0.000   0.000   0.000   1.000;

                           without giving me any error message, it

just stops.

                           Do you have some ideas for why it happens?

                           thanks to everyone,
                           Claudia





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