Hi Jackie
what happens if you just use mri_convert from the start?
Bruce
On Wed, 4 Jul 2007 Chuan.Chih.Yang@rwth-aachen.de wrote:
Dear list,
I have a question about dicom sorting and the coversion to nifti. That is, I used Osirix to sort dicom images into separate runs, and then use mri_convert to convert them from dicom to nifti, which works well for anatomical scans, but not for the functional ones. I have no clue what is lost in the funcitonal runs after sorting with Osirix.
So I tried with Dimon (afni) to sort, and 3DAFNItoNIFTI to convert, but the problem is, the functional and anatomical runs are all in the same folder,and Dimon seems to be a bit problematic with this,(Dimon searches for images that all have the same volume definitions,and since in one folder there are many different z-offset images)
Any suggestions will be helpful.
cheers, Jackie _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer