Re: [Freesurfer] Working with non-FreeSurfer derived meshes and labels

Hi David

I'm pretty sure that the Wash U HCP group has sorted this out. Have you asked them?

cheers Bruce

On Tue, 8 Mar 2016, Slater David wrote:

Hi,

I have some mesh and label files I would like to use with my Freesurfer data however they are in an alternative format (connectome workbench).

I would like to get the labels into the space of a typical Freesurfer subject (e.g. fsaverage), followed by pushing the labels to subject native space and creating volume label files (similar to the aparc native space parcellations).

Is it possible to register an isolated mesh file to the fsaverage subject? How can I convert labels on a .gii mesh file to a standard Freesurfer subject?

Thanks,

David

p.s. The goal of this would be to use the following parcellation scheme with my freesurfer data:

Gordon, E.M., Laumann, T.O., Adeyemo, B., Huckins, J.F., Kelley, W.M., Petersen, S.E., 2014. Generation and Evaluation of a Cortical Area Parcellation from Resting-State Correlations. Cereb. Cortex bhu239–.