Martin,
There is no need to rerun the -autorecon1 step as long as you are happy with the brainmask.mgz (ie, miminal or no skull, and cerebellum retained), and the talairach.xfm is good (which would be the case if your prior runs completed successfully).
We'll probably release another version in mid to late March.
Nick
On Mon, 2009-02-16 at 16:49 +0100, Martin Ystad wrote:
Hi all, I have 100-something scans already run on a FreeSurfer version from 2005 that I'd like to re-run with the newest version of FreeSurfer. The subjects contain manual edits to the brainmask.mgz and wm.mgz, as well as control points. As far as I have understood, when running autorecon2 my manual edits will be saved by default. However, is there any need to re-run the autorecon1-steps for my subjects? Also: when do you plan to release the next version of FreeSurfer?
Many thanks, Martin Ystad _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer