Hi Amir,
The reason that I asked about 7.2.0 is because the other user reported similar issue and they could run 7.2.0 recon-all without errors.
I’m wondering if you could share your T1 and T2 images with us to further debug the issue?
Best,
Yujing
From: AmirHussein Abdolalizadeh amirhussein.a@gmail.com Sent: Thursday, February 9, 2023 5:02 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] T2pial: Numerical argument out of domain
External Email - Use Caution Hi Yujing,
Trying with 7.3.0 also results in the same error. Of note, running recon-all 7.3.2 without -T2/FLAIR and -T2/FLAIRpial flags works without any issues. However, I couldn't try recon-all in the 7.2.0 version (I can give it a try if you think it is necessary). As I said before, running recon-all using the flags above with 7.1.0 works fine, however, I noticed that pial surfaces estimated using T1s alone align far better than surfaces estimated with the addition of T2/FLAIRs.
Amir