Dear Freesurfer Group
I have found a problem in running my subjects. With "recon-all -autorecon1 -autorecon2 -autorecon3 -subjid N?" I ran several subjects after making corrections, but suddenly I received error message as following, and I can not run rest of the subjects. It is saying the subject is already running but I am running the subject elsewhere. Can you please help me to face this issue. Thanks a lot in advance.
INFO: FreeSurfer build stamps do not match Subject Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0 Current Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.0.0 INFO: SUBJECTS_DIR is /Users/christine/CorrectedOnes Actual FREESURFER_HOME /Applications/freesurfer -rw-r--r-- 1 christine staff 469592 Nov 4 12:46 /Users/christine/CorrectedOnes/N3237c/scripts/recon-all.log Darwin administrators-mac-pro.local 10.5.0 Darwin Kernel Version 10.5.0: Fri Nov 5 23:20:39 PDT 2010; root:xnu-1504.9.17~1/RELEASE_I386 i386
ERROR: it appears that recon-all is already running for N3237c based on the presence of /Users/christine/CorrectedOnes/N3237c/scripts/IsRunning.lh+rh. It could also be that recon-all was running at one point but died in an unexpected way. If it is the case that there is a process running, you can kill it and start over or just let it run. If the process has died, you should type:
rm /Users/christine/CorrectedOnes/N3237c/scripts/IsRunning.lh+rh
and re-run. Or you can add -no-isrunning to the recon-all command-line. The contents of this file are: ---------------------------------------------------------- ------------------------------ SUBJECT N3237c HEMI lh rh DATE Wed Nov 2 12:03:39 EDT 2011 USER christine HOST administrators-mac-pro.local PROCESSID 40999 PROCESSOR i386 OS Darwin Darwin administrators-mac-pro.local 10.5.0 Darwin Kernel Version 10.5.0: Fri Nov 5 23:20:39 PDT 2010; root:xnu-1504.9.17~1/RELEASE_I386 i386 $Id: recon-all,v 1.313.2.6 2010/08/04 15:50:56 nicks Exp $ ----------------------------------------------------------
Best Regards --------------------------------------------------- Nooshin N. Zadeh Graduate Assistant
Departments of Electrical Engineering and Neurology University of Miami ** * * * *