Dear FreeSurfer experts,
There are some image processing tools from the MINC toolkit I have been testing out on some FreeSurfer files, that all require the image to be in MINC format. I am able to convert the *.mgz files to *.mgz, but I have been unable to perform the conversion in the other direction (MNC -> MGZ), as forewarned in the mri_convert help file.
The error I get when attempting the conversion is "Not a netCDF file." (in full below)
Would anyone have suggestions for a workaround to get the modified MNC file back into MGZ FreeSurfer format and in the correct orientation?
Thank you for your time,
Eve
evl2001@jake:~/Desktop$ mri_convert -it minc head.mnc -ot mgz head.mgz
mri_convert -it minc head.mnc -ot mgz head.mgz
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from head.mnc...
ncopen: filename "/dir/head.mnc": Not a netCDF file
miopen: MINC package entry point
Error opening /dir/head.mnc
mincRead(): error reading volume from file /dir/head.mnc
Eve LoCastro Staff Associate IDEAL, Radiology Department Weill Cornell Medical College 515 E. 71st St S118 Tel: 212-746-1289 Fax: 212-746-4189 http://ideal-cornell.com/http://ideal-cornell.com