28 Dec
2011
28 Dec
'11
7:18 p.m.
Hi FreeSurfers, I'm trying to fix FreeSurfer's pial and white matter surface boundary estimates on a brain missing a large part of the right hemisphere. I've manually filled in the greatly expanded ventricles in the damaged hemisphere as white matter (see attached) and tried rerunning recon-all with -autorecon2-wm and -autorecon3 flags. This fails to help. Is there sometime else I can do? thanks in advance, -David
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David Groppe, Ph.D.
Postdoctoral Researcher
North Shore LIJ Health System
New Hyde Park, New York
http://www.cogsci.ucsd.edu/~dgroppe/
