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Hi,
I want to highlight one known ROI (eg left caudate) in a MR image. I understand known ROIs are already in aseg or aparc and there is a color look up table, but I want to highlight one ROI at a time.
I searched the website, and found the following instructions, but it highlighted the region of lh.BA45 which has label file at $sub/label/lh.BA45.label. I couldn't find label file at $sub/label/lh.caudate.label. Is there any way to get a known ROI to be highlighted as in the fig below? Thank you so much for the help.
Best Regards Yi
============================================ https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROI
cd $SUBJECTS_DIR mri_label2label \ --srcsubject fsaverage \ --srclabel fsaverage/label/lh.BA45.label \ --trgsubject 004 \ --trglabel 004/label/lh.BA45.label \ --hemi lh \ --regmethod surface
freeview -v 004/mri/orig.mgz
Then on the menu bar click File > Load ROI [loadroi.jpeg] choose lh.BA45.label and hit 'Open'. The label is visible in coronal slice 153. To jump to that slice, double click on the coordinates [127,127,128] next to where it says 'orig' in the Cursor window pane. The last number is the slice number. Change it to 153 and hit enter.
[cid:image003.jpg@01D4DF30.6DED4EC0]
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