Re: [Freesurfer] MRI volume padding in pipeline

Hi Lukas,

try:

mri_convert -rl rawavg.mgz orig.mgz orig.rawavg.mgz

or replace orig.mgz with whatever volume you want to convert

cheers Bruce On Wed, 29 Jun 2011, Lukas Fiederer wrote:

Good day everyone,

I received a Freesurfer processed MRI volume from a college and would like to compare it to the unprocessed data. Alas Freesurfer padded the MRI volume from [384 384 256] to [385 385 385]. I would like to revert this padding! Can someone please be kind enough to tell me in which way the pads are added, ie. how much is added on each side of each dimension.

Thanks a lot, Lukas _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer