Re: [Freesurfer] Cluster-Defining Threshold of p=0.025

Andy, please remember to post to the FS list, thanks. As for your question, this is a bug in mri_glmfit-sim that hard codes the allowable thresholds. I've attached a version that should work with 1.6.

On 09/14/2017 10:06 AM, Jahn, Andrew wrote:

Thanks again; I was able to create new simulation tables. However, when I run mri_glmfit-sim, I get the following error:

foreach dir (results_Directory) mri_glmfit-sim \ --glmdir {$dir} \ --mczsim 1.6 abs \ --cwp 0.05 \ --2spaces end

ERROR: thresh = 1.6, must be 1.3, 2.0, 2.3, 3.0, 3.3, 4.0

I get this error even though I have the tables located in $FREESURFER_HOME/average/mult-comp-cor/fsaverage/lh/cortex/fwhm10/abs. Is there something I'm missing?

Best,

-Andy