Hello Bruce:
My apologies for the incomplete way to raise the question. Anyway, we have solved it. Thank you very much.
On Fri, Mar 17, 2017 at 3:30 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Manuel
how do you know it is binary? Have you tried changing the window levels in freeview when you view it? And in general when you report errors please include the full screen output of what you ran, and in cases like this, and image to illustrate the issue.
cheers Bruce
On Fri, 17 Mar 2017, Manuel Delgado wrote:
After recon-all (recon-all -all -s 479_001), which finished without
errors, the T1.mgz appears as a binary mask. I am using Freesurfer v 6.0 and Ubuntu 16.04. Please let me know if you need further files. Thank you,
Manuel
On Thu, Mar 16, 2017 at 4:09 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote: what is the error exactly? Please provide the recon-all.log file and a description of the problem
On 03/16/2017 06:28 AM, Manuel Delgado wrote: > Dear list, > After recon-all the T1 seems to have an error. Has anybody had this > problem before? Please find attached the image. I guess I have to > recon-all again. I am using v 6.0 with Ubuntu 16.04. > Thank you. > > -- > *Manuel Delgado Alvarado, MD* > Neurology Department > Neuroimaging Unit > Valdecilla Biomedical Research Institute, IDIVAL > Santander, SPAIN > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Manuel Delgado Alvarado, MD Neurology Department Neuroimaging Unit Valdecilla Biomedical Research Institute, IDIVAL Santander, SPAIN
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