glad to hear it worked out Bruce On Sat, 7 Oct 2017, Ali Radaideh wrote:
Dear Bruce,
many thanks for your email. I have noticed that the FreeSurfer I am still using is 5.3.0 and this version seems not to work with my Ubuntu 16.10 due to issues related to the current version of "Perl" (version 22). I have just downloaded the latest version of FreeSurfer (version 6) and everything seems to work fine.
Many thanks, Ali
On Fri, Oct 6, 2017 at 4:24 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Ali
can you send us your full command line, the full screen output and the recon-all.log file that should have been generated in the subject's scripts dir? cheers Bruce On Fri, 6 Oct 2017, Ali Radaideh wrote: Dear FreeSurfer Experts, I have just launched a new project and collected new T1 weighted images (as my previous ones) and started processing them using FreeSurfer. Unfortunaely non of them works with FreeSurfer. When I run recon-all -autorecon-all -s subjecname, I get the following error: #@# Talairach Fri Oct 6 09:20:02 EEST 2017 /home/ali/processing/Farah_hospital/MR.BASHEER_IGIAM/mcropped_noor/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz Linux ali-XPS-L501X 4.8.0-54-generic #57-Ubuntu SMP Wed May 24 10:21:44 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux recon-all -s mcropped_noor exited with ERRORS at Fri Oct 6 09:20:05 EEST 2017 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting I have checked my images and they look fine and they are similar to the ones I have processed a year ago. I have searched for a solution to this error but unfortunately I did not find any. Could you please help me on this? Thanks alot in advance, Ali -- Ali M. Al-Radaideh. PhD Department of Medical Imaging Faculty of Allied Health Sciences The Hashemite University, Zarqa, Jordan W.phone +962 5 3903333 ext.5422, 5355, 5364 Email: ali.radaideh@hu.edu.jo webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM= _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Ali M. Al-Radaideh. PhD Department of Medical Imaging Faculty of Allied Health Sciences The Hashemite University, Zarqa, Jordan W.phone +962 5 3903333 ext.5422, 5355, 5364 Email: ali.radaideh@hu.edu.jo webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=