Dear all,
does someone out there run freesurfer (freesurfer-Linux-rh9-dev20060210-full.tar.gz) under debian etch? Installation runs smoothly, however, when I test the freesurfer installation with
medpc32:~$ tksurfer bert rh pial
only a tiny fraction of Bert's brain is displayed. The GUI otherwise seems to work as I can rotate etc this brain fraction.
I installed the same freesurfer version on a different computer running debian "sarge", which is the current stable distribution. - Here, I can see the whole brain!
As suggested elsewhere I thus compared the shared library dependencies using
medpc32:~$ ldd `which tkmedit`
Here is what I got:
######### "etch"-machine: #########
medpc32:~$ ldd `which tkmedit` linux-gate.so.1 => (0xffffe000) libtix8.1.8.3.so => /local/opt/freesurfer_dev20060210/lib/tcltktixblt/lib/libtix8.1.8.3.so (0xb7fb0000) libtk8.4.so => /local/opt/freesurfer_dev20060210/lib/tcltktixblt/lib/libtk8.4.so (0xb7ef0000) libtcl8.4.so => /local/opt/freesurfer_dev20060210/lib/tcltktixblt/lib/libtcl8.4.so (0xb7e57000) libglut.so.3 => /usr/lib/libglut.so.3 (0xb7e0d000) libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0xb7e04000) libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0xb7dec000) libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0xb7dd6000) libXi.so.6 => /usr/X11R6/lib/libXi.so.6 (0xb7dce000) libGLU.so.1 => /usr/lib/libGLU.so.1 (0xb7d4f000) libGL.so.1 => /usr/lib/libGL.so.1 (0xb7ceb000) libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0xb7c20000) libgsl.so.0 => /local/opt/freesurfer_dev20060210/lib/gsl/lib/libgsl.so.0 (0xb7acc000) libgslcblas.so.0 => /local/opt/freesurfer_dev20060210/lib/gsl/lib/libgslcblas.so.0 (0xb7a9c000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0xb7a7c000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0xb7a2a000) libz.so.1 => /usr/lib/libz.so.1 (0xb7a15000) libm.so.6 => /lib/tls/libm.so.6 (0xb79ef000) libcrypt.so.1 => /lib/tls/libcrypt.so.1 (0xb79c1000) libc.so.6 => /lib/tls/libc.so.6 (0xb788a000) libdl.so.2 => /lib/tls/libdl.so.2 (0xb7886000) libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0xb7878000) libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0xb7827000) libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0xb774a000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb773f000) libpthread.so.0 => /lib/tls/libpthread.so.0 (0xb772d000) libXxf86vm.so.1 => /usr/X11R6/lib/libXxf86vm.so.1 (0xb7728000) /lib/ld-linux.so.2 (0xb7feb000)
######### "sarge" machine: #########
kogneuro-web:~$ ldd `which tkmedit` libtix8.1.8.3.so => /local/data/tools/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.3.so (0xb7fae000) libtk8.4.so => /local/data/tools/freesurfer/lib/tcltktixblt/lib/libtk8.4.so (0xb7eee000) libtcl8.4.so => /local/data/tools/freesurfer/lib/tcltktixblt/lib/libtcl8.4.so (0xb7e55000) libglut.so.3 => /usr/lib/libglut.so.3 (0xb7e1b000) libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0xb7e12000) libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0xb7dfb000) libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0xb7de4000) libXi.so.6 => /usr/X11R6/lib/libXi.so.6 (0xb7ddc000) libGLU.so.1 => /usr/lib/libGLU.so.1 (0xb7d61000) libGL.so.1 => /usr/lib/libGL.so.1 (0xb7cf2000) libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0xb7c2b000) libgsl.so.0 => /local/data/tools/freesurfer/lib/gsl/lib/libgsl.so.0 (0xb7ad7000) libgslcblas.so.0 => /local/data/tools/freesurfer/lib/gsl/lib/libgslcblas.so.0 (0xb7aa6000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0xb7a88000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0xb7a38000) libz.so.1 => /usr/lib/libz.so.1 (0xb7a26000) libm.so.6 => /lib/tls/libm.so.6 (0xb7a04000) libcrypt.so.1 => /lib/tls/libcrypt.so.1 (0xb79d7000) libc.so.6 => /lib/tls/libc.so.6 (0xb78a1000) libdl.so.2 => /lib/tls/libdl.so.2 (0xb789e000) libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0xb7890000) libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0xb783f000) libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0xb7785000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb7779000) libpthread.so.0 => /lib/tls/libpthread.so.0 (0xb776a000) /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0xb7fea000)
The differences seem to be:
######### "etch" machine: ######### libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0xb774a000) libXxf86vm.so.1 => /usr/X11R6/lib/libXxf86vm.so.1 (0xb7728000) /lib/ld-linux.so.2 (0xb7feb000)
######### "sarge" machine: ######### libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0xb7785000) /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0xb7fea000)
Does this mean that the c++ libraries on my etch-running machine are "too" new? Why is there no "=>" for /lib/ld-linux.so.2 on my etch-running machine?
I would greatly appreciate any comments or ideas what else I could do.
Many thanks in advance,
Marcus