Hi Eugenio,
just to confirm I understand the currently available options. There are two multispectral strategies (MPRAGE + high res 2D T2, or MPRAGE + 3D FLAIR). It would be great to see if the combo option improves things even further for the subfields (MPRAGE + high res 2D T2 + 3D FLAIR). Is that option at all possible with the available FS version or in the works?
Best,
Jorge
On 05/09/2016 16:13, Iglesias, Eugenio wrote:
The same one; just change the input file and the analysis ID
- T2: recon-all -s mySubject -hippocampal-subfields-T1T2
myT2scan.nii.gz T2
- FLAIR: recon-all -s mySubject -hippocampal-subfields-T1T2
myFLAIRscan.nii.gz FLAIR
Cheers,
/Eugenio
Juan Eugenio Iglesias Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
On 5 Sep 2016, at 15:10, Vaz pandolfo, Renata <rvp8@njit.edu mailto:rvp8@njit.edu> wrote:
Dear FS experts, I have a question about the "segmentation with an additional scan - multispectral segmentation" on the hippocampal sf segmentation, FS dev. 6.0. For controls on which I had already run recon-all -all, I added the T2 sequence with the following command: recon-all -s <subject_name> \ -hippocampal-subfields-T1T2 <file name of additional scan> <analysisID>
Now, if I want to do the same thing with FLAIR as the additional input, which flag should I use? Thank you, Renata
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