sorry, it doesn't sound like this is the problem. You could try putting some seed points in the white matter for the watershed. Not sure what the interface is for that. You should also check to make sure that the atlas transform it is using is reasonable.
On Wed, 7 Oct 2009, Gonzalo Rojas wrote:
Hi:
How can I put the control points in the nu.mgz image ?...
Sincerely
Gonzalo Rojas Costa Department of Radiology Las Condes Clinic Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl
Nick Schmansky escribió:
check if the whitematter in the file T1.mgz is around value 110. if not, then put some control points in the white matter in nu.mgz and re-run recon-all.
n.
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