I think mri_segstats –i option will do that - https://surfer.nmr.mgh.harvard.edu/fswiki/mri_segstats
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of ERNEST KISSI Sent: Wednesday, February 7, 2024 8:12 AM To: Freesurfer support list Freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Calculation of MRI intensity
External Email - Use Caution Hi Freesurfer Team, Please I want to calculate the mean intensity of a skullstripped MRI image. I do not want to use recon-all because I do not want to parcellate or segment it. Is there such utility or function in freesurfer? Thank you. Sincerely, Ernest Kissi Kontor.