6 Aug
2020
6 Aug
'20
2:31 p.m.
External Email - Use Caution
Hi freesurfer developers, I am trying to run mri segstats for multiple subjects but the following only produces one text file for the first subject. Any idea what I am doing wrong?
for subj in $(cat sessid.txt); do mri_segstats --seg /Users/Desktop/AUT/dti/TBSS_FA/FA/${subj}_FA_skeleton_JHU_wmparc_segmentation.nii.gz --in /Users/Desktop/AUT/dti/TBSS_FA/origdata/${subj}.nii.gz --ctab /Users/Desktop/AUT/TBSS_FA/stats/JHU_wmparc_segmentation_ColorLUT.txt --sum /Users/Desktop/AUT/TBSS_FA/roi/FA_${subj}_M.txt done
Thank you.