Hello, The command
mri_convert -it dicom -ot mgz 0001_9746dc8ab0544b3c8460cc2925682ba3.dcm 001.mgz
gives the following output:
mri_convert -it dicom -ot mgz 0001_9746dc8ab0544b3c8460cc2925682ba3.dcm 001.mgz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from 0001_9746dc8ab0544b3c8460cc2925682ba3.dcm... Starting DICOMRead2() dcmfile = /home/kambiz/data/freesurfer/ilabs/tmp/206/DICOM/0001_9746dc8ab0544b3c8460cc2925682ba3.dcm dcmdir = /home/kambiz/data/freesurfer/ilabs/tmp/206/DICOM Ref Series No = 301 Found 707 files, checking for dicoms WARNING: tag image orientation not found Found 705 dicom files in series. WARNING: tag image orientation not found First Sorting Computing Slice Direction Vs: 85.2923 -138.9 161.601 Vs: 0.371599 -0.605155 0.704061 Second Sorting Counting frames nframes = 1 nslices = 705 ndcmfiles = 705 MRIalloc(0, 0, 705): bad parm ERROR: mri alloc failed
I am running freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 on RedHat 5.8 I don't understand what the problem is?
Thanks in advance Kambiz