I'm sure it was a centos build. Nick, do we have an rh9 build that we get a copy of mri_vol2vol to give to Kai?
Kai Li wrote:
Hi Doug, Is the executable you provided below a rh9 build? It seems that it isn't. It reported an error indicating it might be a build for something else. Could you please send a rh9 build?
/mri_vol2vol: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
Thanks, Kai On Wed, 3 Jan 2007, Doug Greve wrote:
I think you have an older version. Try the one in:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_vol2vol
Kai Li wrote:
Yes, Doug did answered and thank you, Doug. I tried the command that Doug gave, but the command mri_vol2vol complained "Option --mov unknown". Then I tried replace --mov with --in, it complained that --tar is unknown. I actually couldn't find the options --mov, --tar, --o, and --regheader in the mri_vol2vol help. Is this because I'm using an older or newer version of freesurfer?
Thanks Kai
To go back to the original space, you can
mri_vol2vol --mov aseg.mgz --targ rawavg.mgz --o aseg-in-source.mgz --interp nearest --regheader
doug
On Tue, 2 Jan 2007, Bruce Fischl wrote:
I think Doug answered that, didn't he?
On Tue, 2 Jan 2007, Kai Li wrote:
Hi Bruce, Thanks a lot for your response. Still another question: it seems that ribbon.mgz is in the space of 1x1x1mm, isn't it? If that is the true, I wonder how to transform it back to the original input space.
Thanks, Kai
On Tue, 2 Jan 2007, Bruce Fischl wrote:
Hi Kai,
I think you can use the ribbon.mgz for cortical gray matter, and they aseg for other things.
cheers, Bruce On Tue, 2 Jan 2007, Kai Li wrote:
> Hi, > I wonder how to get masks on the cerebral white matter and the > cerebral cortex. In particular, I'd like to have the masks in > the space of the original input image. I noticed that in the > asegm.mgz cerebral white matter and cerebral cotex are > explicitly labeled, but I'm not sure if this is the final result > instead of an intermediate result of less accuracy. If I should > use aseg.mgz, do I need to do some transformation to go back to > the original space, and how to? > > Thanks, > Kai > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >
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