External Email - Use Caution
Hello, Can anyone help me with this? I think it got lost in the pool of email.
Best, Paul ---------- Forwarded message ---------- From: miracle ozzoude miracooloz@gmail.com Date: Thu, Jul 5, 2018 at 12:23 PM Subject: error with mri_ca_register in long To: Douglas N Greve freesurfer@nmr.mgh.harvard.edu
Hello All,
When running the longitudinal pipeline for version 6, i encountered this error " TransformSample: gcam has not been inverted!; Numerical result out of range". I found a thread with similar error but the problem wasn't solved. https://mail.nmr.mgh.harvard.edu/pipermail/ freesurfer/2017-April/051240.html. Just like the previous thread, it happens whenever I include the "-bigventricle" flag. Below is a sample of my recon-all scripts from cross-sectional to longitudinal. The error.log and recon.log files are too large to send. Thank you.
Best, Paul
Cross-sectional recon-all -s ${SUBJECTS_DIR}/$session -autorecon-all -i ${filename} -hippocampal-subfields-T1 -parallel -openmp 20 -bigventricles -3T -time
Longitudinal recon-all -base ${session} -tp "${tp1}" -tp "${tp2}" -all -parallel -openmp 20 -bigventricles -3T -time
recon-all -long ${tp1} ${session} -all -parallel -openmp 20 -bigventricles -3T -time recon-all -long ${tp2} ${session} -all -parallel -openmp 20 -bigventricles -3T -time