can you send us the recon-all.log? On Mon, 7 Dec 2009, Ritobrato Datta wrote:
Hello All,
I ran recon-all for a subject and when I did the following to check the gray matter and white matter segmentation I found that it couldnt do it.
tkmedit subjid brainmask.mgz lh.white -aux T1.mgz -aux-surface rh.white
Please see attached fig. All slices are like this one. Can anyone suggest how do I fix it ?
Waiting for your reply
Thank you
Ri