Dear freesurfer exports,
I am trying to recon more than 10 T1 scans from a single subject, but something went wrong.
I have converted all T1 nifti files into mgz format into mri/orig directory with following names: 001.mgz 002.mgz ��. 010.mgz 011.mgz�� But when I run the command:
��recon-all �Cs ${subjec} �Cautorecon1 �Cnotal�Ccheck �Cclean-bm �Cgcut �C no-isrunning -noappend��,
it seems that recon-all only recognizes the files with names 01*.mgz(i.e. 0013.mgz), the 00*.mgz(i.e. 001.mgz) files failed to be processed. Once I change the files name to ��001.mgz 002.mgz ��. 0010.mgz 0011.mgz��, the 00*. mgz(i.e. 001.mgz) are able to be recognized, but the 001*.mgz(i.e. 0013.mgz) files failed.
How should I deal with this to make all files recognized?
Sincerely,
Dong Haoming