Thank you! Is there something similar to assign labels to functional cortices eg. motor, visual, auditory?
Thanks S On Feb 28, 2013, at 10:47 AM, Rudolph Pienaar wrote:
After a conventional FS run you can do the following:
$>mri_annotation2label --subject <subj> --hemi <hemi> --lobesStrict <hemi>.lobesStrict.annot
Which will create an annotation file <hemi>.lobesStrict.annot containing the lobar labels. To extract these into their own individual label files, do
$>mri_annotation2label --subject <subj> --hemi <hemi> --annotation lobesStrict --outdir <subj>/label
This will populate the <subj>/label directory with files:
<hemi>.frontal.label <hemi>.parietal.label <hemi>.temporal.label <hemi>.occiptal.label <hemi>.cingulate.label
So, to be pendantic, if you want the lobar labels for the left hemisphere of a subject called 'sub1', you would
$>mri_annotation2label --subject sub1 --hemi lh --lobesStrict lh.lobesStrict.annot $>mri_annotation2label --subject sub1 --hemi lh --annotation lobesStrict --outdir sub1/label
HTH -=R
On Thu Feb 28 09:24:58 2013, Sudhin A. Shah wrote:
Hello,
Is there a lookup table I can use to convert free surfer labels to lobes? Either label nos (1006, 2006 etc) or label names (ctx-rh-superiorfrontal)? I have 86 labels and want an easy way to differentiate them into the corresponding lobes.
Thanks, S _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Rudolph Pienaar, M.Eng, D.Eng / email: rudolph@nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street, Charlestown, MA 02129 USA
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