Hi Emily - Can you please send your configuration file and trac-all.log? It's impossible to tell what's going on without seeing those.
For now the b-values and gradient vectors are assumed to be the same for all subjects, so you enter only one of each.
The code is not set up to run in parallel on multiple cores on a single computer. It's set up to submit each subject as a job if you run it on a cluster. This capability though depends a lot on the specific cluster that you have, and you may need your cluster admin's help to set it up.
Hope this helps, a.y
On Fri, 8 Nov 2013, ebelleau@uwm.edu wrote:
Hello,
I had some questions about setting the dmrirc file for batch processing for DTI.
I set the subject list I put in the 6 subjects I wanted to process. Then in the dcmlist I put in the pathway to the data files for each subject. I put a space in between each subjects pathways. Then I put in the pathway for each subjects bvec and bval file under the set bvec and set bval file respectively. In theory, they are exactly the same for each subject, so if I can only input one that would be fine.
I tried doing this and it processed only one subject. Am I missing something? I am brand new to tracula.
Also, based on what I am understanding, the script will run through 6 subjects simultaneously and not one by one, so should cut down on time since I am working with multiple cores? Do I need to specify the scores on a script so that it will use all cores available?
Thanks so much,
Emily _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer