use -nuisreg mcprextreg 3
On 03/19/2014 11:34 AM, shahin@nmr.mgh.harvard.edu wrote:
I used "-nuisreg mcprextreg" in mkanalysis-sess. Got this error:
Error: -nuisreg requires two arguments"
-nuisreg
On 03/19/2014 11:24 AM, shahin@nmr.mgh.harvard.edu wrote:
Does not accept "-nuis" flag. I changed my mkanalysis-sess to this:
mkanalysis-sess -analysis ColorPrj_TR4_1p5mm_PR_ANOVA -fwhm 1.5 -paradigm Conds.par -native -event-related -polyfit 2 -gammafit 2.25 1.25 -nuis mcprextreg -TR 4 -nconditions 8 -refeventdur 14 -force -fsd bold_Color -per-run
and got this error:
ERROR: Flag -nuis unrecognized.
I think it is just confused because it expects native to be per-session. One way around this is to just specify -nuis mcprextreg instead of -mcprextreg doug
On 03/19/2014 11:15 AM, shahin@nmr.mgh.harvard.edu wrote:
But this is a per-run analysis and preproc-sess is -per-run (in native space). I assumed that I have to change my mkanalysis-sess to this:
mkanalysis-sess -analysis ColorPrj_TR4_1p5mm_PR_ANOVA -fwhm 1.5 -paradigm Conds.par -native -event-related -polyfit 2 -gammafit 2.25 1.25 -mcprextreg -TR 4 -nconditions 8 -refeventdur 14 -force -fsd bold_Color -per-run
But using -mcprextreg flag generates an error. Is it a bug?
There is not an mcextreg file there. There is mcprextreg file. I think you need to run preproc with -per-session to get the mcextreg file doug
On 03/18/2014 02:34 PM, SHAHIN NASR wrote: > Hi, > When I run selxavg3-sess, I face this error: > > ERROR: cannot find volume matching > /autofs/cluster/tootell/pitcairn/1/shahin/ColorPrj/7T/Sbj/myla2/bold_Color/013/mcextreg > ERROR: loading nonpar reg > /autofs/cluster/tootell/pitcairn/1/shahin/ColorPrj/7T/Sbj/myla2/bold_Color/013/mcextreg > ------------------------------------------ > ERROR: fast_selxavg3() failed\n > > I repeated the preproc-sess from scratch and it worked fine, > finished without any problem and I still get the same error. I even > check the registration in this run and it fine. > > Now I am wondering why do I see this error for this subjects > (and > why I don't see it for the other subjects)? > > Regards > -- > Shahin Nasr > > PhD in Cognitive Neuroscience > Martinos Imaging Center, MGH
> Harvard Medical School
Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/