Dear Theo, Can you please provide us with the command you executed, and the complete output logs? Cheers, /Eugenio
-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "AKUDJEDU, THEOPHILUS" T.AKUDJEDU1@nuigalway.ie Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Monday, 26 February 2018 at 12:39 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Hippocampal Subfield Error
Hi All,
I tried to run a subject through FreeSurfer 6.0 for hippocampal Subfield segmentation but exited with errors.
The content of the recon-all.error file is below.
SUBJECT CHRM2001 DATE Sun Feb 25 00:34:13 GMT 2018 USER 15233963 HOST psych-sl03 PROCESSOR x86_64 OS Linux Linux psych-sl03 3.10.0-327.36.3.el7.x86_64 #1 SMP Mon Oct 24 16:09:20 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ /opt/ohpc/pub/apps/freesurfer/6.0.0/bin/recon-all PWD /home/15233963/freesurfer/SUBJECTS/CHRM2001/label CMD mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab CHRM2001 rh white
Will be glad if you can provide guidance.
Cheers
Theo
_______________________________
Theophilus Akudjedu
BSc, MSc, PhD Candidate
Room 202 Comerford Suite,
Clinical Science Institute,
Department of Psychiatry,
National University of Ireland, Galway
Phone: +353 838329602
Email: t.akudjedu1@nuigalway.iemailto:t.akudjedu1@nuigalway.ie
rasningo@gmail.commailto:rasningo@gmail.com
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