Hi Amanda
if it is a T1 map then it will have inverse contrast from what we expect. If you have a PD map also you can run them through mri_synthesize to apply the Bloch equations to synthesize a T1-weighted image (e.g. with a flip angle of 30).
cheers Bruce
On Tue, 26 Jan 2016, Worker, Amanda wrote:
Hi All,
I have a T1 map which has been synthesised from a DESPOT imaging sequence and I am hoping to use this as input to recon-all. Do you know if this will be possible at all, or if there is anything I can do to prepare the T1 map to run through recon-all?
Thanks in advance,
Amanda