Hi,
I have a similar questionto the one listed below. After I edit brainmask.mgz and wm.mgz, my understanding was that I could run autorecon2-wm
and would not have to run autorecon2-pial because -wm will run everything else through the end of -autorecon2.
However, if brainmask.mgz is run at the end of autorecon1, don't I need to run autorecon1 again, since wm or contol point edits would alter the brainmask??
Thanks for help, Helen
____________________________________________________________
"Hi Dana,
you can do autorecon2-cp and it will do both things (the wm comes after it in the stream anyway)
cheers Bruce On Tue, 9 Mar 2010, Dana W. Moore wrote:
Hello everyone,
There is an image that needs white matter edits (editing voxels) as well as control points. I know the two commands I need to re-run are autorecon2-cp and autorecon2-wm. Can I do both kinds of edits and somehow combine the -cp and -wm commands, or do I need to do the control points first, re-run, and then do further white matter edits?
Thanks, Dana