Hi Efrat, you've done the preproc-sess correctly, but you'll need to modify the mkanalysis-sess. See
http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastFunctionalConnectivityWalkthr...
dpug
On 05/13/2013 02:26 PM, Efrat Kliper wrote:
Dear freeSurfer expert,
I am trying to perform whole brain functional connectivity analysis
Is there a wiki for resting state analysis? I have only found this wiki pagehttps://surfer.nmr.mgh.harvard.edu/fswiki/FsFastTutorialV5.1/FsFastPreProc
So far I have run the following commands:
preproc-sess -s TB_482 -fsd Rest -stc odd -surface fsaverage lhrh -mni305 -fwhm 5 -per-run
What is the next step?
Should I use the mkanalysis-sess command?
(mkanalysis-sess -TR 3 -fsd Rest -stc odd -surface fsaverage lh -mni305 2 -fwhm 5 -analysis TB_482_lh -notask)?
Running this command it seems to create only an output file with a list of information and nothing more, what am i doing wrong?
In addition for resting state analysis,band filter of 0.01-0.08Hz needs to be done.How do i do that and to which of the output files? I don’t find any record about that either.
Thanks in advance,
Efrat
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