Hi Seung-Gul
the easiest way to get it to extend further is to play with the intenisty bounds in mris_make_surfaces. For example, if you reduce max_gray_at_the_csf_border you will force it to settle further out
cheers Bruce On Fri, 30 Sep 2016, Seung Gul Kang wrote:
Hi Freesurfer expert, I am doing visual editing. In some subjects, the pial surface border is somewhat narrow (within the border of graymatter in my view) although there is no skull stripping error. I heard that adding the control point might extend the border of graymatter as well as that of white matter from other researcher. Is it true? Or, is there other way to edit to extend the pial surface border?
Thank you.
Best, Seung-Gul
Seung Gul Kang, M.D., Ph.D.
Psychiatrist, Associate Professor; Department of Psychiatry, Gil Medical Center, Gachon University, School of Medicine, 21, Namdong-daero 774 beon-gil, Namdong-gu, Incheon, 21565, South Korea Research scholar; Sleep Disorders Clinical Research Program, Department of Psychiatry, Massachusetts General Hospital, Harvard Medical School, 1 Bowdoin Square, 9th floor, Boston, MA 02114, USA Collaboration researcher; Division of Sleep & Circadian Disorders, Brigham & Women's Hospital, Harvard Medical School, 221 Longwood Ave, Boston MA 02115 [t?sender=ac2cua2FuZzQyMkBnbWFpbC5jb20%3D&type=zerocontent&guid=a9fadef6-6c 71-43eb-bd31-0c372e27c0d6] ᐧ