Re: [Freesurfer] Cortex thickness

Hi Feruza

The thickness for each hemisphere is computed automatically by recon-all and stored in the subject’s surf dir as lh.thickness and rh.thickness. You can visualize them as overlays on surfaces in freeview, or do cross-subject statistics with them.

Cheers Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Feruza Turdialieva Sent: Saturday, March 22, 2025 3:06 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Cortex thickness

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Can anyone explain how to use FreeSurfer (Freeview) to measure cortical thickness? I would really appreciate any help!

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