Hi Jeff, func2roi-sess is obsolete (should not have included it in 5.3). You need to use a combination of funcroi-config and funcroi-sess. See the help with funcroi-config doug
On 09/05/2013 03:45 PM, jwaugh@nmr.mgh.harvard.edu wrote:
Hello Freesurfers, I am re-running an older analysis in stable3. I know that this version is out of date, but I'm trying to line up new data with old data. I have previously run a script that uses the func2roi-sess command with no problems. Now, when I run the same script, I'm getting a new error
command line: func2roi-sess -roidef M6_LH_t6_0_sm5_0thresh -analysis tap_lh_long_CD_R01BTX_ctrl1_sess1_sm5 -maskcontrast tap_lh_long_CD_R01BTX_ctrl1_sess1_sm5_contrast -labelfile /cluster/ablood/1/AdjustedParadigmFiles/Adjusted_recons/CD_R01BTX_ctrl1_sess1_recon/label/M6_LH_CD_R01BTX_ctrl1_sess1.label -maskthresh 6.0 -masktail pos -maskmap t -s CD_R01BTX_ctrl1_sess1 -df sessdirfile
returns: ---------------------------------------------------------- func2roi-sess logfile is /autofs/cluster/ablood/1/AdjustedParadigmFiles/log/func2roi-sess.log
ERROR: cannot find tap_lh_long_CD_R01BTX_ctrl1_sess1_sm5/analysis.info
The analysis.info file (and all other files called upon in the script) are in place and seem to be correctly constructed. The log file (/cluster/ablood/1/AdjustedParadigmFiles/log/func2roi-sess.log) doesn't give me any new info.
Did something change in the last ~6 months with the func2roi command? Any insights on why it can't find the analysis.info file?
Thank you! Jeff
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