1 Dec
2021
1 Dec
'21
9:43 a.m.
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Dear FreeSurfer Developers,
We are using InfantFS and noticed that after running recon-all ("infant_recon_all --newborn --s ${SUBJ}”) , the voxel size changes to 1*1*1. I know that using "mri_label2vol --seg aseg.mgz --temp rawavg.mgz --o aseg-in-rawavg.mgz --regheader aseg.mgz” we can convert the aseg output of adult FreeSurfer to native space. Is there any similar command to do so for infants?
I wanted to try this one, however there is no rawavg.mgz file in the mri folder of infant subjects.
Thanks in advance, Fateme