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Hello everyone,
Could anyone please help me to know which Atlas is used in the segmentation of corpus callosum, hippocampus, and fornix using freeSurfer from Brian MR images. I have gone through the literature but couldn't find it.
With Regards Ahsan --------------------------------------------- Ahsan Ali Ph.D Scholar Department of Applied Mechanics (Biomedical Engineering Group) Indian Institute of Technology Madras Chennai-600036, Tamil Nadu, INDIA Mob.:- +91-8899605552
---------- Forwarded message --------- From: Fischl, Bruce R.,PHD BFISCHL@mgh.harvard.edu Date: Wed, May 22, 2024, 10:52 PM Subject: RE: Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus To: Ahsan Ali ahsan889960@gmail.com
Can you please post to the list so that others can answer?
*From:* Ahsan Ali ahsan889960@gmail.com *Sent:* Wednesday, May 22, 2024 1:04 PM *To:* Fischl, Bruce R.,PHD BFISCHL@mgh.harvard.edu *Subject:* Re: Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus
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Dear sir,
It is not clear from these papers to me.
With Regards Ahsan --------------------------------------------- Ahsan Ali Ph.D Scholar Department of Applied Mechanics (Biomedical Engineering Group) Indian Institute of Technology Madras Chennai-600036, Tamil Nadu, INDIA Mob.:- +91-8899605552
On Wed, May 22, 2024, 8:19 PM Fischl, Bruce R.,PHD BFISCHL@mgh.harvard.edu wrote:
Mostly these:
https://secure-web.cisco.com/1DKaAagv5wrZcn_HucsSWH8TG1zknHKvHLkGgJhoy1pwq5h... https://secure-web.cisco.com/1HR13_22Yz_9WpJjcigfRprjowpMV_nRs6XlxrY4Yb6j-evXZPGWuDST9cxl5hrxqDnY36OO-DWh-DHSjC9WOyIdWgTfSivwYdntG4mLrhEbocZQg77rCDLRrqkGdC4dWr1XAk8WpbIxARclMD5q1amLPtLgHzr62m0sYbJf__P7pnOZtoEuK1057w9V7mi6qkL5etQsJbwrUvACGhLjQuWkDaxxo9qqitpcmukocz-fAPaBs2D8pKIeiiU1d7egRwVS8Nkx8q9jk3JGCtUAPQYOhElJt4Jlt0aKAKsEsIPaLOQ-Cg-OS_XVvpyAb80SOw-iFHYeilK24sF1yxOvsKg/https%3A%2F%2Fpubmed.ncbi.nlm.nih.gov%2F15501102%2F
https://secure-web.cisco.com/1XuxKv5CEuHRfXAdPzciFLM-HiNv8hX8h1hN2vYlGz0J9uz... https://secure-web.cisco.com/1uYxJbJpTbAO8ILMWce1OXOAM2VlXwJ80ARMpic7_Y4CDCd-TX029cOcV76RNwmJ1nX4ausAz1tjUF9_GxGxyGRCGgqgXBMiYXeLT7ZmxBcjHuOxap7AgRk-pC7cxm3aJTC4ZTj2M2hn-AX4UOibz9tM2KWaoWRHc6PmlqHukLdRoIj4Fd3IvbvmddW8OTAMAJvENkfreybAHGhjav3ERNfMCAe1MQIhc9H96lfgpLgC137ztsnIJvZHYAiSNFtc5a3gPsCCbuMHfMj4WU3_KUBmE2i0VtIdg_slM5HAyiVam1S2U3u_NEoSuiNC12r54hcfwryLRIZg9jDnyjvXnlw/https%3A%2F%2Fdoi.org%2F10.1016%2FS0896-6273%2802%2900569-X
cheers
Bruce
*From:* Ahsan Ali ahsan889960@gmail.com *Sent:* Wednesday, May 22, 2024 4:31 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu; Huang, Yujing YHUANG43@mgh.harvard.edu; Fischl, Bruce R.,PHD < BFISCHL@mgh.harvard.edu> *Subject:* Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus
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Dear FreeSurfer Team,
After reviewing the literature, I have a question: which atlases are used in the segmentation of the fornix, corpus callosum, and hippocampus from magnetic resonance images using FreeSurfer? This is a significant question for me, and I would appreciate a clear and concise answer. Please provide some relevant references.
With Regards Ahsan --------------------------------------------- Ahsan Ali Ph.D Scholar Department of Applied Mechanics and Biomedical Engineering (AMBE) Indian Institute of Technology Madras Chennai-600036, Tamil Nadu, INDIA Mob.:- +91-8899605552
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