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Dear Eugenio,
We checked the RAM setting of the Docker container and found it was default using 2GB RAM! Then we set the Maximum RAM up to 16GB and work all done!! Thank you for your patience helping so much! Wish you have a great day!
Best regards, Josephine
freesurfer-request@nmr.mgh.harvard.edu 於 2021年6月12日 週六 上午12:01寫道：
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Today's Topics:
- Re: T1 hippocampal subfields exited with ERRORS (Iglesias Gonzalez, Juan E.)
- Open Position: Postdoc or PhD Student for Deep Learning based Lesion Recognition in human MRI (Dr. rer. nat. Johannes Jungilligens)
- Finding equivalent vertices on fsaverage_sym lh and rh surfaces (Tim Sch?fer)
- Re: memory allocation error (Bernardoni, Fabio)
- Issues with recon-all hanging (Michael Datko)
- Re: how to visualize statistical maps in FS7.1? (Bernardoni, Fabio)
Message: 1 Date: Fri, 11 Jun 2021 11:52:08 +0000 From: "Iglesias Gonzalez, Juan E." JIGLESIASGONZALEZ@mgh.harvard.edu Subject: Re: [Freesurfer] T1 hippocampal subfields exited with ERRORS To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: 2E162B79-9558-4942-8B6E-55A7B384D524@mgh.harvard.edu Content-Type: text/plain; charset="utf-8"
Dear Josephine, This is unusual. Could it be possible that you are running out of RAM memory? Do you have 16GB or more available? Cheers, /Eugenio
On 11 Jun 2021, at 01:39, ??? <ytlin923@g.ntu.edu.twmailto: ytlin923@g.ntu.edu.tw> wrote:
External Email - Use CautionDear Developer and Eugenio,
We encounter the error at the end of the analysis,it looks like this:
Smoothing mesh collection with kernel size 0.750000 .../usr/local/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 40: 499 Killed /usr/local/freesurfer/bin/segmentSubjectT1_autoEstimateAlveusML S013 /data 0.333333333333333333333333333333333333 /usr/local/freesurfer/average/HippoSF/atlas/AtlasMesh.gz /usr/local/freesurfer/average/HippoSF/atlas/AtlasDump.mgz /usr/local/freesurfer/average/HippoSF/atlas/compressionLookupTable.txt 0.05 right L-BFGS v21 '/usr/local/freesurfer/bin/fs_run_from_mcr /usr/local/freesurfer/bin/' 0 Linux f8e6a6f8a44a 5.10.25-linuxkit #1 SMP Tue Mar 23 09:27:39 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
T1 hippocampal subfields exited with ERRORS at Thu Jun 10 10:22:54 UTC 2021
I've attached the log file here, could you help us with this error? Thank you so much!
Best regards, Josephine
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