It says that it's not on the path. I thought export MATLAB would fix that issue but apparently not.
Best, Idil ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Wednesday, September 20, 2017 11:42 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Matlab(?) failure in selxavg3-sess
what happens if you run the getmatlab command?
If you don't have a startup.m, then create one
On 09/20/2017 04:34 PM, Yagmur Ozdemir 19 wrote:
Hello freesurfer experts,
When I run the selxavg3-sess command (for retinotopy) , the command exits with this "fast_selxavg3b('/mnt/c/Users/yagmuridil/Desktop/freesurfer/Project/Sess01/bold/rtopy.self.lh/sxa3.config.txt') if(~fast_fileexists('/tmp/selxavg3-sess-3166.ok')); quit; end" and then gives a "Matlab: Command not found" error. Can anyone help me troubleshoot this? I initially thought there was a problem with the system recognizing the Matlab in my computer, I tried to export a Matlab home, and tried to follow the steps here https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg05046.html but my ~/matlab folder doesn't have a startup.m file.
1/1 /mnt/c/Users/yagmuridil/Desktop/freesurfer/Project/Sess01
Çrş Eyl 20 16:17:28 DST 2017 anadir = /mnt/c/Users/yagmuridil/Desktop/freesurfer/Project/Sess01/bold/rtopy.self.lh DoGLMFit = 1 DoContrasts = 1 UpdateNeeded = 1 Sess01 Update needed /mnt/c/Users/yagmuridil/Desktop/freesurfer/Project/Sess01/bold/rtopy.self.lh/sxa3.config.txt MLF is /tmp/selxavg3-sess-3166.m
% Çrş Eyl 20 16:17:26 DST 2017 % /mnt/c/Users/yagmuridil/Desktop/freesurfer/Project % rtopy.self.lh which fast_selxavg3 which fast_ldanaflac which MRIread
fast_selxavg3b('/mnt/c/Users/yagmuridil/Desktop/freesurfer/Project/Sess01/bold/rtopy.self.lh/sxa3.config.txt') if(~fast_fileexists('/tmp/selxavg3-sess-3166.ok')); quit; end %--------------------------------
quit;
------- matlab output -------------------- matlab: Command not found.
ERROR: fast_selxavg3() failed\n
Thank you, Idil
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