Hi Bruce,
I do not see any improvement in the skull stripping by decreasing the height. I have also tried using the multistrip flag but I do not see any changes no matter the height. Also, it seems that after watershed, it is not respecting the manual edits that I have made as you can see in the Before_Watershed.png attachment in my first email.
Thank you for your help.
Sourav
________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Tuesday, July 22, 2014 5:59 PM To: Freesurfer support list Subject: Re: [Freesurfer] Watershed
Hi Sourav
can you explain what failed? Was too much removed? Too little? What did you try to fix it? Bruce On Tue, 22 Jul 2014, SOURAV RANJAN KOLE wrote:
Hi Bruce,
Thank you for your message.
Yes, I rechecked the result and have tried it several times. It still seems to be not working. However, our lab has used the watershed flag previously and it had worked. Not sure what has changed.
Thank you for your help.
Sourav
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Sunday, July 20, 2014 8:15 PM To: Freesurfer support list Cc: greve@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Watershed
Hi Sourav Are you sure the skull stripping isn't working? It can be hard to tell right on the midline Cheers Bruce
On Jul 18, 2014, at 5:38 PM, SOURAV RANJAN KOLE sourav.kole@utah.edu wrote:
Sourav
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