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Hi again,
sorry. Please find attached the recon-all.log. I´m not sure how to check the input to watershed.
Thanks, Boris
Am 11.10.2018 um 18:55 schrieb Bruce Fischl fischl@nmr.mgh.harvard.edu:
Hi Boris
can you check to make sure that the input to the watershed looks ok? Also, in general it is a lot easier for us to help if you send us the full command line and screeen output and attach the recon-all.log
cheers Bruce
On Thu, 11 Oct 2018, Boris Rauchmann wrote:
External Email - Use CautionWhen I run recon-all i get the follwing error message: mri_watershed Error: GLOBAL region of the brain empty ! Linux 02f92500bcfb 4.15.0-36-generic #39~16.04.1-Ubuntu SMP Tue Sep 25 08:59:23 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-XYZ exited with ERRORS at Thu Oct 11 15:10:22 UTC 2018 The .nii file looks fine. Can someone help me with this? Best, Boris
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