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Hello,
I am trying to run recon-all on my data and am encountering the following issue:
developer@developer-VirtualBox:~/freesurfer$ recon-all -subject 3T00300 -i /usr/home/developer/desktop/TIWI.nii -T2 /usr/home/developer/desktop/T2_Flair.nii -T2pial -all ERROR: cannot find /usr/home/developer/desktop/TIWI.nii Linux developer-VirtualBox 5.4.0-137-generic #154~18.04.1-Ubuntu SMP Tue Jan 10 16:58:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 3T00300 exited with ERRORS at Fri Feb 3 10:49:02 EST 2023
For more details, see the log file To report a problem, see http://secure-web.cisco.com/1bRGI0GFgxZrKH_-NM5aKbo8jy3AYVqO8EQuizksRFT_koqn...
developer@developer-VirtualBox:~/freesurfer$ recon-all -subject 3T00300 -i sample-001.mgz ERROR: cannot find sample-001.mgz Linux developer-VirtualBox 5.4.0-137-generic #154~18.04.1-Ubuntu SMP Tue Jan 10 16:58:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 3T00300 exited with ERRORS at Fri Feb 3 10:52:53 EST 2023
For more details, see the log file To report a problem, see http://secure-web.cisco.com/1bRGI0GFgxZrKH_-NM5aKbo8jy3AYVqO8EQuizksRFT_koqn...
developer@developer-VirtualBox:~/freesurfer$
Is it that my path is not set correctly?
Thank you! Rachel Wagner