External Email - Use Caution
Hello Ruopeng,
I am on FS 7.2.0, MacOS Big Sur 11.4.
Crash only occurs when I try to load a volume.
Best regards, Grace Nie
On Thu, Jul 29, 2021 at 5:07 PM Wang, Ruopeng RWANG4@mgh.harvard.edu wrote:
What version of freesurfer are you running? Does the crash happen as soon as you start up freeview or only when you load a volume?
Ruopeng
On Jul 29, 2021, at 7:28 PM, Grace gracenie45@gmail.com wrote:
External Email - Use CautionHello,
I am on MacOS and unable to load any volumes. I have searched your archives and did not find a comparable response. Do you have any recommendations on how to proceed? I can provide you my institutional email address if needed.
This is the error message I get:
Process: freeview [1195] Path: /Applications/freesurfer/*/Freeview.app/Contents/MacOS/freeview Identifier: com.freesurfer.freeview Version: 0 Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: freeview [1195] User ID: 501
Date/Time: 2021-07-29 16:23:01.109 -0700 OS Version: macOS 11.4 (20F71) Report Version: 12 Bridge OS Version: 5.4 (18P4663) Anonymous UUID: A1410107-8780-F44D-22B0-84D1DAB41E59
Time Awake Since Boot: 4100 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: EXC_I386_GPFLT Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Segmentation fault: 11 Termination Reason: Namespace SIGNAL, Code 0xb Terminating Process: exc handler [1195]
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 org.qt-project.QtGui 0x0000000111f01bbe QPen::QPen() + 46 1 org.qt-project.QtGui 0x0000000111ed3b15 QPainterState::QPainterState() + 69 2 org.qt-project.QtGui 0x0000000111ea9a01 QRasterPaintEngine::createState(QPainterState*) const + 49 3 org.qt-project.QtGui 0x0000000111ec3978 QPainter::begin(QPaintDevice*) + 248 4 org.qt-project.QtGui 0x0000000111ec3872 QPainter::QPainter(QPaintDevice*) + 242 5 org.qt-project.QtWidgets 0x000000011180e0ed 0x1116b0000 + 1433837 6 org.qt-project.QtWidgets 0x000000011180db70 QMainWindow::event(QEvent*) + 64 7 org.qt-project.QtWidgets 0x00000001116c070d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269 8 org.qt-project.QtWidgets 0x00000001116c1b12 QApplication::notify(QObject*, QEvent*) + 594 9 org.qt-project.QtCore 0x000000011238e564 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 10 org.qt-project.QtWidgets 0x00000001116f5391 QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, int, QPainter*, QWidgetBackingStore*) + 2929 11 org.qt-project.QtWidgets 0x00000001116ce0bb 0x1116b0000 + 123067 12 org.qt-project.QtWidgets 0x00000001116fc8fd QWidget::event(QEvent*) + 1645 13 org.qt-project.QtWidgets 0x000000011180dc45 QMainWindow::event(QEvent*) + 277 14 org.qt-project.QtWidgets 0x00000001116c070d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269 15 org.qt-project.QtWidgets 0x00000001116c1b12 QApplication::notify(QObject*, QEvent*) + 594 16 org.qt-project.QtCore 0x000000011238e564 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 17 org.qt-project.QtCore 0x000000011238f79e QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 878 18 libqcocoa.dylib 0x000000011470cd39 0x1146d7000 + 220473 19 libqcocoa.dylib 0x000000011470d4a8 0x1146d7000 + 222376 20 com.apple.CoreFoundation 0x00007fff2059597c __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17 21 com.apple.CoreFoundation 0x00007fff205958e4 __CFRunLoopDoSource0
- 180
22 com.apple.CoreFoundation 0x00007fff20595664 __CFRunLoopDoSources0 + 242 23 com.apple.CoreFoundation 0x00007fff2059408c __CFRunLoopRun + 893 24 com.apple.CoreFoundation 0x00007fff2059364c CFRunLoopRunSpecific
- 563
25 com.apple.HIToolbox 0x00007fff287d1ab3 RunCurrentEventLoopInMode + 292 26 com.apple.HIToolbox 0x00007fff287d16e6 ReceiveNextEventCommon + 284 27 com.apple.HIToolbox 0x00007fff287d15b3 _BlockUntilNextEventMatchingListInModeWithFilter + 70 28 com.apple.AppKit 0x00007fff22d946f2 _DPSNextEvent + 864 29 com.apple.AppKit 0x00007fff22d92ec5 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364 30 com.apple.AppKit 0x00007fff22d85239 -[NSApplication run]
- 586
31 libqcocoa.dylib 0x000000011470c223 0x1146d7000 + 217635 32 org.qt-project.QtCore 0x0000000112389b7f QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag) + 431 33 org.qt-project.QtCore 0x000000011238eb72 QCoreApplication::exec() + 130 34 com.freesurfer.freeview 0x0000000100cd87dd 0x100bd8000 + 1050589 35 libdyld.dylib 0x00007fff204b7f5d start + 1
Thread 1: 0 libsystem_pthread.dylib 0x00007fff20498420 start_wqthread + 0
Thread 2:: QThread 0 libsystem_kernel.dylib 0x00007fff2046d9ca poll + 10 1 org.qt-project.QtCore 0x00000001123e48d0 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 608 2 org.qt-project.QtCore 0x00000001123e60c7 QEventDispatcherUNIX::processEvents(QFlagsQEventLoop::ProcessEventsFlag)
- 903
3 org.qt-project.QtCore 0x0000000112389b7f QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag) + 431 4 org.qt-project.QtCore 0x00000001121c537c QThread::exec() + 140 5 org.qt-project.QtCore 0x00000001121c62f3 0x1121a4000 + 140019 6 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 3:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff204672ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff2046762c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff20595b5f __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff2059423f __CFRunLoopRun + 1328 4 com.apple.CoreFoundation 0x00007fff2059364c CFRunLoopRunSpecific
- 563
5 com.apple.AppKit 0x00007fff22f1a68a _NSEventThread + 124 6 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 4: 0 libsystem_pthread.dylib 0x00007fff20498420 start_wqthread + 0
Thread 5: 0 libsystem_pthread.dylib 0x00007fff20498420 start_wqthread + 0
Thread 6: 0 libsystem_pthread.dylib 0x00007fff20498420 start_wqthread + 0
Thread 7: 0 libsystem_pthread.dylib 0x00007fff20498420 start_wqthread + 0
Thread 8:: ThreadIOWorker 0 org.qt-project.QtCore 0x0000000112467cd4 0x1121a4000 + 2899156 1 org.qt-project.QtCore 0x0000000112466080 0x1121a4000 + 2891904 2 org.qt-project.QtCore 0x000000011246617e 0x1121a4000 + 2892158 3 org.qt-project.QtCore 0x00000001124558ce 0x1121a4000 + 2824398 4 org.qt-project.QtCore 0x0000000112459eda 0x1121a4000 + 2842330 5 libsystem_c.dylib 0x00007fff203cbd35 __cxa_finalize_ranges
- 316
6 libsystem_c.dylib 0x00007fff203cc020 exit + 53 7 com.freesurfer.freeview 0x0000000101e4f87c 0x100bd8000 + 19363964 8 com.freesurfer.freeview 0x0000000101ed84f8 0x100bd8000 + 19924216 9 com.freesurfer.freeview 0x0000000100c4cf2c 0x100bd8000 + 479020 10 com.freesurfer.freeview 0x0000000100c4d5bd 0x100bd8000 + 480701 11 com.freesurfer.freeview 0x0000000100c74cc5 0x100bd8000 + 642245 12 com.freesurfer.freeview 0x0000000100d5f0af 0x100bd8000 + 1601711 13 org.qt-project.QtCore 0x00000001121c62f3 0x1121a4000 + 140019 14 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224 15 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit): rax: 0x000096f74be32fa0 rbx: 0x00007f98aa2a4e40 rcx: 0x0000000000000001 rdx: 0x00007f98aa2a4e00 rdi: 0x00007f98aa2a4e40 rsi: 0x000060000024d750 rbp: 0x00007ffeef023d00 rsp: 0x00007ffeef023cd0 r8: 0x000000000000c5c0 r9: 0x00007f98aa008101 r10: 0x0000000000003f01 r11: 0x00007f98aa000000 r12: 0x0000000000000000 r13: 0x0000600003b2e970 r14: 0x0000000000000000 r15: 0x00007ffeef023e10 rip: 0x0000000111f01bbe rfl: 0x0000000000010282 cr2: 0x00007f98aa175608
Logical CPU: 2 Error Code: 0x00000000 Trap Number: 13
Thread 0 instruction stream: 00 00 55 48 89 e5 8b 47-08 48 c7 06 00 00 00 00 ..UH...G.H...... 89 46 08 8b 47 0c 89 46-0c 8b 47 10 89 46 10 5d .F..G..F..G..F.] c3 90 55 48 89 e5 5d c3-90 90 90 90 90 90 90 90 ..UH..]......... 90 90 55 48 89 e5 41 57-41 56 41 55 41 54 53 50 ..UH..AWAVAUATSP 48 89 fb 8b 05 99 68 1c-00 8b 05 93 68 1c 00 85 H.....h.....h... c0 79 1f 48 8b 05 48 68-1c 00 48 8b 00 48 89 03 .y.H..Hh..H..H.. [f0]ff 00 48 83 c4 08 5b-41 5c 41 5d 41 5e 41 5f ...H...[A\A]A^A_ <== 5d c3 4c 8d 35 31 68 1c-00 4c 89 f7 e8 99 a8 14 ].L.51h..L...... 00 8b 05 5b 68 1c 00 85-c0 0f 85 c3 00 00 00 bf ...[h........... 08 00 00 00 e8 8d b4 14-00 49 89 c7 48 8d 7d d0 .........I..H.}. be 02 00 00 00 ba 01 00-00 00 e8 f3 5c f2 ff bf ............... 48 00 00 00 e8 6d b4 14-00 49 89 c5 41 c7 45 00 H....m...I..A.E.
Thread 0 last branch register state not available.
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0x7fff3d5bffff com.apple.gpusw.GPURawCounter (20.3 - 12.0) <EBB93DE3-AFE7-34FE-A194-7DFC62FFB9AA> /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter 0x7fff3fc2c000 - 0x7fff3fca9fff com.apple.TextInput (1.0 - 1.0) <BC1AA691-A1A5-3368-8267-FA912891F59D> /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput 0x7fff40daf000 - 0x7fff40ddefff libncurses.5.4.dylib (57) <575D6FE4-911D-39E4-8D19-1CC44687CE6D> /usr/lib/libncurses.5.4.dylib 0x7fff4126b000 - 0x7fff41289fff libCGInterfaces.dylib (544.4) <02C89930-F64D-354E-8C18-F3DDB419DC8D> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib 0x7fff43814000 - 0x7fff43a87fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) <408A3DFB-B3D3-3C15-88BB-16076BDFC74B> /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera 0x7fff46358000 - 0x7fff46363fff libGPUSupportMercury.dylib (18.5.9) <43A9855E-09F8-3F12-8A97-781328A7A758> /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib 0x7fff4798e000 - 0x7fff479cefff com.apple.osanalytics.OSAnalytics (1.0 - 1) <96B8D855-E10D-3E40-884F-DA0BBAE9F48F> /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics 0x7fff515e5000 - 0x7fff51612fff com.apple.HelpData (2.3 - 201) <3125FBF3-30B7-3237-B001-2692332FF681> /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData 0x7fff51613000 - 0x7fff5162dfff com.apple.shortcut (2.16 - 118) <1FD9ABCC-0B5B-37DC-9E6E-CC47C128DBB2> /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut 0x7fff5162e000 - 0x7fff516cdfff com.apple.Symbolication (12.5 - 64544.70.1) <B57534E5-43D5-38CA-9A8C-A66EBDFB820A> /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication 0x7fff5dca8000 - 0x7fff5e137fff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.4.5 - 16.0.4) <994BBF27-F4D5-3561-BC2E-FECC0C460C76> /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver 0x7fff5eec8000 - 0x7fff5feaffff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.4.5 - 16.0.4) <844E918A-E28D-3FF0-B391-2E3F3FFA0F68> /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver 0x7fff6965e000 - 0x7fff69662fff libmetal_timestamp.dylib (31001.189) <89A82967-B14D-3109-B45E-34717156E60E> /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib 0x7fff6baa9000 - 0x7fff6baaffff libCoreFSCache.dylib (200.9) <12A2A7E7-39F7-30A5-AC0B-E09947417D3E> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib 0x7fff6bab0000 - 0x7fff6bab4fff libCoreVMClient.dylib (200.9) <F8C4D017-075A-37B2-AE8D-8CEB5FE1BC9B> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib 0x7fff6bab5000 - 0x7fff6bac4fff com.apple.opengl (18.5.9 - 18.5.9) <1422D0CA-C3E2-3309-8897-018E651CB74E> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL 0x7fff6bac5000 - 0x7fff6bac7fff libCVMSPluginSupport.dylib (18.5.9) <AC7D4088-7CA8-3A0B-9B55-08427083C382> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib 0x7fff6bac8000 - 0x7fff6bad0fff libGFXShared.dylib (18.5.9) <76ABDB4A-3687-39E0-B8FB-125717742431> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib 0x7fff6bad1000 - 0x7fff6bb04fff libGLImage.dylib (18.5.9) <750C938A-9F4F-3BAD-8D3F-03EF619F28AD> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib 0x7fff6bb05000 - 0x7fff6bb41fff libGLU.dylib (18.5.9) <4A77F717-2BBC-3439-AE10-694E82C0A184> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib 0x7fff6bb42000 - 0x7fff6bcd5fff libGLProgrammability.dylib (18.5.9) <811C33B6-9856-3D1F-8947-3899496630BD> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib 0x7fff6bcd6000 - 0x7fff6bce0fff libGL.dylib (18.5.9) <95D5C72E-9352-39EC-83B1-6BB295A83462> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib 0x7fff6bce1000 - 0x7fff6be5efff GLEngine (18.5.9) <F8809EE9-15B0-36EC-8F33-12B869822B72> /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine 0x7fff6be5f000 - 0x7fff6be87fff GLRendererFloat (18.5.9) <F4858214-65AC-3CEF-834D-7A13370D9C5D> /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat 0x7fff6d120000 - 0x7fff6d178fff com.apple.opencl (4.6 - 4.6) <769BB23D-09E5-3A3A-B2EA-310157AA206D> /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL 0x7fff6e222000 - 0x7fff6e229fff com.apple.agl (3.3.4 - AGL-3.3.3) <23E38B10-2F27-3BB2-B78D-C28189C21601> /System/Library/Frameworks/AGL.framework/Versions/A/AGL 0x7fff7791e000 - 0x7fff77925fff libRosetta.dylib (203.46) <0A17EAFC-15E9-37FE-8EE2-DE0F7F220AD8> /usr/lib/libRosetta.dylib
External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0
VM Region Summary: ReadOnly portion of Libraries: Total=801.5M resident=0K(0%) swapped_out_or_unallocated=801.5M(100%) Writable regions: Total=910.5M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=910.5M(100%)
VIRTUAL REGIONREGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 512K 4 Activity Tracing 256K 1 CG backing stores 2880K 6 CG image 136K 14 CoreAnimation 53.9M 32 CoreGraphics 12K 2 CoreImage 56K 5 CoreUI image data 3256K 24 Foundation 16K 1 Kernel Alloc Once 8K 1 MALLOC 268.2M 94 MALLOC guard page 32K 8 MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) STACK GUARD 56.0M 9 Stack 12.1M 9 VM_ALLOCATE 228K 24 __DATA 258.9M 365 __DATA_CONST 17.1M 200 __DATA_DIRTY 793K 118 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 504.0M 25 __OBJC_RO 70.2M 1 __OBJC_RW 2480K 2 __TEXT 297.6M 362 __UNICODE 588K 1 mapped file 230.6M 29 shared memory 768K 17 =========== ======= ======= TOTAL 2.1G 1357 TOTAL, minus reserved VM space 1.7G 1357
Model: MacBookAir8,2, BootROM 1554.120.19.0.0 (iBridge: 18.16.14663.0.0,0), 2 processors, Dual-Core Intel Core i5, 1.6 GHz, 8 GB, SMC Graphics: kHW_IntelUHDGraphics617Item, Intel UHD Graphics 617, spdisplays_builtin Memory Module: BANK 0/DIMM0, 4 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C3531324D3634443450512D3039 Memory Module: BANK 1/DIMM0, 4 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C3531324D3634443450512D3039 AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x843), wl0: Feb 15 2021 23:32:14 version 9.30.444.10.32.5.61 FWID 01-89152cbf Bluetooth: Version 8.0.5d7, 3 services, 27 devices, 1 incoming serial ports Network Service: Wi-Fi, AirPort, en0 USB Device: USB 3.0 Bus USB Device: Apple T2 Bus USB Device: Apple Internal Keyboard / Trackpad USB Device: Headset USB Device: Ambient Light Sensor USB Device: FaceTime HD Camera (Built-in) USB Device: Apple T2 Controller Thunderbolt Bus: MacBook Air, Apple Inc., 47.5
Best regards, Grace Nie _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1xaLZg6Z_WhDvwU88aOaXxYKmaZ99SYphR_g6PQMfXB-Ex0...
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