Hi Doug, Output and sumfile are attached. Any ideas? Linda
Message: 10 Date: Mon, 13 Aug 2012 15:55:13 -0400 From: Douglas N Greve greve@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Freesurfer Digest, Vol 102, Issue 10 To: freesurfer@nmr.mgh.harvard.edu Message-ID: 50295BA1.8090307@nmr.mgh.harvard.edu Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Hi Linda, can you send the terminal output for mri_segstats? Can you
also send the summary file?
doug
On 08/13/2012 10:59 AM, Linda Douw wrote:
Hi Doug,
I first parcellate fsaverage5 using ico4 (all my functional data are
morphed to fsaverage5 surface):
mris_make_face_parcellation /fsaverage5/rh.inflated $FREESURFER_HOME/lib/bem/ic4.tri rh.ico4.annot
Then I extract the waveforms using mri_segstats
mri_segstats --i rh.functional.nii.gz --avgwf rh_ico4.txt --annot
fsaverage5c rh ico4 --sum ico4_rh.sum
Hope this clarifies the problem! Linda
Message: 25 Date: Fri, 10 Aug 2012 11:18:38 -0400 From: Douglas N Grevegreve@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] ico4 parcellation and mri_segstats To: freesurfer@nmr.mgh.harvard.edu Message-ID:5025264E.3030801@nmr.mgh.harvard.edu Content-Type: text/plain; charset=ISO-8859-1; format=flowed
what are your command lines? doug
On 08/09/2012 01:21 PM, Linda Douw wrote:
Dear Freesurfers,
I'm trying to extract the average waveforms from all 2562 ROIs in an
annotation constructed using mris_make_face_parcellation with ico4. However, I get only 2460 waveforms after doing mri_segstats, and the summary files show that several ROIs are 'skipped' for some reason. Am I
missing something?
Thanks,