Hi Giusy
that's a tough one. Is there white matter in those gyri? It's hard to tell from the 3 single-slice views. We have processed a bunch of FCD-patient data without this type of issue Bruce On Thu, 11 Jul 2013, Giusy Chinnici wrote:
Dear developers, I'm working with patients affected by cortical focal dysplasia; images of these patients often show thickening in some areas of the cortex. In many cases the reconstruction of the pial boundary is not accurate. I have been trying to correct this boundary but I couldn't understand the procedure. I have already checked accuracy and intensity of white matter and have found no issues. I have attached a self explanatory picture.
I wonder if you can help me to fix grey matter boundary errors.
Thanks a lot in advance for your help! Best regards!
-- Giusy Chinnici