I don't know about the 1st question, but on the 2nd question, you do not have to rerun recon-all twice if you fix both of them at the same time.
doug
Ali Radaideh wrote:
Dear FreeSurfer experts,
I have two question for you please,
First, I started recently to get the following message when I try to load the tkmedit
GLUT: Fatal Error in tkmedit.bin: OpenGL GLX extension not supported by display: IP address
And sometimes
tkmedit.bin: xcb_io.c:452: _XRead: Assertion `dpy->xcb->reply_data != 0' failed. aborted
Second, I have some images that have both intensity normalisation and Geometric distortion due to MS lesions. I followed the tutorial on how to fix these problems. My question is that, I don't want to re-run freesurfer twice (when I fix the intensity normalisation and one when I edit the white matter). Is there any command line I can use after saving changes to do both?.
Many thanks in advance
Ali
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