External Email - Use Caution
Thanks for the info. I have the atlas surface (with vertex data) saved as a .vtk. Would the mris_sample_parc work with this input file type?
On Sat, Jun 12, 2021 at 1:01 PM Fischl, Bruce BFISCHL@mgh.harvard.edu wrote:
I see. And what do you want to do with the annot and label files? Annots are surface parcellations only, so you would need to sample to a surface to get them. If you have a surface you can use mris_sample_parc to sample it onto the surface and create an annotation (I think Doug has something newer/better documented that will also do this, but I can’t remember what it is)
Cheers
Bruce
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *Evan Collins *Sent:* Saturday, June 12, 2021 12:16 PM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Inquiry about creating .label files from .nii file
External Email - Use Caution *Hi Bruce,
It is volumetric.
Thanks!
On Sat, Jun 12, 2021 at 11:47 AM Fischl, Bruce BFISCHL@mgh.harvard.edu wrote:
Hi Evan
Is it a volumetric atlas or a surface one?
Cheers
Bruce
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *Evan Collins *Sent:* Saturday, June 12, 2021 11:33 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Inquiry about creating .label files from .nii file
External Email - Use Caution *FreeSurfer,
I currently have a .nii atlas file and a corresponding LUT (look-up table). The atlas is appropriately segmented and colored as seen in Freeview. How do I create/export the corresponding .label and .annot files?
Thank you.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/16LcMmcuTqrNAYBnY85o27cUmWu3wmyBCntiPCJTh9ZYnYZ... https://secure-web.cisco.com/1EwuVDdy5zKHSMZf4K-UmbxEgtSSmiWRjp2itD09L3TeS8yHG6qRiRZG-qRcxZ0MW7nrBtSpQYr2X9AW4RDV8ZrO2fbmBG32c2ISvO6To6UK6PSbxX8bK41RxsmpV-0sfj_ImQstOX4o87iC0pvRQSkeQ4Ww8ieVz7lC0Mhjs7CNHtpY9Soi5lJCFXudlPFvokDFnAiz-ZjzJbxnuT2kTn-axf_w2WlSF48Pz2wYEgGtOAkeXRq77RvbcisFIlbZsxpr1SEOSxnRJb_s1n8Uyig/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1f7gR10P3_ag1jPYDsafD4clwq1uYik6qT1dl_Thlf23EnOR... http://secure-web.cisco.com/1OzdCKf--UGrjAH3ju9ms3AnmX2AWiyrLJ8beXA8sRFGpw0wWHaJUAANNfwFO0ttCK44b90l1iNuJu-yu5EQY5Kuu7PxpU9PxHI53BM55hLfvHZYB3j2R_h-d-tguOd7hulysBWqFopFCLt9rA3ZSyq-da3d3VXo1xKGSZYcvBeSor8H_DhZOoR5amaKpBU6PlI9mki3GcGVlqcoRzHGRL8G998CEGm4Aw4ahooyVbJ74HBjIpnX12ej9ZQOGXAoo5fZgQSJX4Y2LfOAiFCbiMA/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/16LcMmcuTqrNAYBnY85o27cUmWu3wmyBCntiPCJTh9ZYnYZ... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://secure-web.cisco.com/1f7gR10P3_ag1jPYDsafD4clwq1uYik6qT1dl_Thlf23EnOR... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.