There was no picture attached. There was a zip with 3 jpgs, but I could only display one of them.
doug
Alex Fornito wrote:
Hi all, Sorry if this is a re-post, but I’m not sure if the first one got through.
I’m really stuck on a problem I was hoping to get help with.
I’m having trouble determining the correspondence between ROIs in a surface-based annotation and those in a volume-based annotation generated using mri_aparc2aseg. I have some custom-generated surface annotations and have been using a recently updated binary of mri_aparc2aseg which adds 10,000 to the values of left hemi annotation labels and 20.000 to the right hemi labels in the converted volume, to help distinguish the two hemisphere’s rois.
To check the correspondence between the surface and volume, I chose an roi 10386 from the volume. To check it on the surface I did the following in matlab:
[v,l,ct]=read_anntotation('lh.fsavg_500_compact.aparc.annot'); new=zeros(size(v)); new(find(l==ct.table(386,5)))=1; % note the roi index should be 10,000 less that of the volume. F=write_wfile('386.w',new,v);
I did this for both the fsaverage surface and a single subject surface, and compared it with the volume representation for the same single subject. The attached pic called vol386 shows the roi in blue, overlaid on the volume parcellation in greyscale. It is located in the left inferior temporal lobe.
The attached surf386 pic however, indicates this region is in the retrosplenial cortex for both the single subject (left) and fsaverage (right). Am I missing something here? Have I misunderstood the correspondence between surface and volume rois?
Thanks for your help, Alex
Alex Fornito CJ Martin Post-Doctoral Fellow Brain Mapping Unit Department of Psychiatry University of Cambridge Downing Site Downing St, Cambridge UK CB2 3EB
Email: af397@cam.ac.uk Phone: +44 (0) 1223 764670 Fax: +44 (0) 1223 336581
/Australian Details: / Melbourne Neuropsychiatry Centre National Neuroscience Facility Levels 1 & 2, Alan Gilbert Building 161 Barry St Carlton South 3053 Victoria, Australia
Email: fornitoa@unimelb.edu.au Phone: +61 3 8344 1861 Fax: +61 3 9348 0469
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