Re: [Freesurfer] MNC label to Freesurfer

Hi Caspar,

One thing you can do, if you have the label correspondences between your lables and the FS ones, is to use mri_binarize with the --replace option in your volumes.

--replace V1 V2 : replace voxels=V1 with V2

For label descriptions you can loook up $FREESURFER_HOME/FreeSurferColorLUT.txt.

--Lilla

On Mon, 6 Jan 2014, Caspar M. Schwiedrzik wrote:

Hi! I have a volume in MNC format that contains labels, and I was wondering whether there is a way to quickly convert them into Freesurfer labels? Within the MNC file, voxels belonging to one label all have the same intensity value, which is, however, not in RGB space but just a single number, ranging from 1 to the number of labels. Thanks, Caspar